nav emailalert searchbtn searchbox tablepage yinyongbenwen piczone journalimg journalInfo journalinfonormal searchdiv searchzone qikanlogo popupnotification paper paperNew
2017, 06, v.36 2539-2547
番茄TCP基因家族全基因组鉴定和分析
基金项目(Foundation): 河南省基础与前沿技术研究计划项目(132300410032)资助
邮箱(Email):
DOI: 10.13417/j.gab.036.002539
发布时间: 2017-06-25
出版时间: 2017-06-25
移动端阅读
摘要:

TCP基因家族是与植物有关的转录因子家族,它对植物的生长和发育有重要作用。为了揭示番茄TCP基因家族的功能,本研究利用全基因组信息鉴定番茄TCP转录因子家族。结果表明,番茄TCP基因家族共有36个成员;进化分析表明,TCP基因家族可分为2组:ClassⅠ和ClassⅡ,ClassⅡ又可以分成CIN和CYC/TB1两个小组;基因结构分析表明,家族成员有13个外显子构成;序列分析表明这些家族成员都含有高度保守的b HLH结构域,有的还含有R结构域。这些结果有助于今后揭示番茄TCP基因家族成员的功能。

Abstract:

TCP gene family is a family of plant-related transcription factors that plays an important role in the growth and development of plants. To study the function of TCP gene family in tomato, we used whole genome database to investigate TCP genes family in tomato. The results showed that 36 TCP genes existed in the tomato TCP genes family; Phylogenetic analysis showed that TCP genes family could be divided into two classes: ClassⅠand Class Ⅱ, and Class Ⅱ could be further classified into two subclasses: CIN and CYC/TB1. Gene structure analysis revealed that TCP genes contained 13 exons. In addition, sequence analysis indicated that all these 36 genes contained highly conserved b HLH domain, and some also contained R domain. The above results would be helpful to reveal the function of TCP gene family members in tomato.

参考文献

An J.X.,2012,TCP11 regulates the development of vascular bundles in Arabidopsis thaliana,Dissertation for Ph.D.,Lanzhou University,Supervisor:Li J.,pp.41-42(安家兴,2012,拟南芥TCP11调控维管束的发育,博士学位论文,兰州大学,导师:黎家,pp.41-42)

Cubas P.,Lauter N.,Doebley J.,and Coen E.,1999,The TCP domain:a motif found in proteins regulating plant growth and development,Plant J.,18(2):215-222

Doebley J.,Stec A.,and Hubbard L.,1997,The evolution of apical dominance in maize,Nature,386(6624):485-488

Guo Z.,Fujioka S.,Blancaflor E.B.,Miao S.,Gou X.,and Li J.,2010,TCP1 modulates brassinosteroid biosynthesis by regulating the expression of the key biosynthetic gene DWARF4in Arabidopsis thaliana,Plant Cell,22(4):1161-1173

Ji Z.R.,Gu Y.B.,Dong Q.L.,Chi F.M.,Qiao Z.,Xu C.N.,Zhang J.X.,and Zhou Z.S.,2015,G enome-wide identification and analysis of TCP gene family in grape,Jiyinzuxue Yu Yingyong Shengwuxue(Genomics and Applied Biology),34(10):2194-2199(冀志蕊,谷彦冰,董庆龙,迟福梅,乔壮,徐成楠,张俊祥,周宗山,2015,葡萄TCP基因家族全基因组鉴定和分析,基因组学与应用生物学,34(10):2194-2199)

Kosugi S.,and Ohashi Y.,1997,PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene,Plant Cell,9(9):1607-1619

Koyama T.,Furutani M.,Tasaka M.,and Ohme-Takagi M.,2007,TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis,Plant Cell,19(2):473-484

Liu Y.,Zhang H.,Xin D.W.,Wang L.L.,Zhang L.W.,Liu C.Y.,Chen Q.S.,and Hu G.H.,2012,Domain analysis and function prediction of TCP transcription factors family in soybean,Dadou Kexue(Soybean Science),31(5):707-713(刘洋,张慧,辛大伟,王琳琳,张丽伟,刘春燕,陈庆山,胡国华,2012,大豆TCP转录因子家族结构域分析及功能预测,大豆科学,31(5):707-713)

López-Juez E.,Dillon E.,Magyar Z.,Khan S.,Hazeldine S.,De Jager S.M.,Murray J.A.H.,Beemster G.T.S.,B觟gre L.,and Shanahan H.,2008,Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis,Plant Cell,20(4):947-968

Luo D.,Carpenter R.,Vincent C.,Copsey L.,and Coen E.,1996,Origin of floral asymmetry in Antirrhinum,Nature,383(6603):794-799

Martín-Trillo M.,and Cubas P.,2010,TCP genes:a family snapshot ten years later,Trends in Plant Sci.,15(1):31-39

Pruneda-Paz J.L.,Breton G.,Para A.,and Kay S.A.,2009,Afunctional genomics approach reveals CHE as a component of the Arabidopsis circadian clock,Science,323(5920):1481-1485

Ruuska S.A.,Girke T.,Benning C.,and Ohlrogge J.B.,2002,Contrapuntal networks of gene expression during Arabidopsis seed filling,Plant Cell,14(6):1191-1206

Schommer C.,Palatnik J.F.,Aggarwal P.,Chételat A.,Cubas P.,Farmer E.E.,Nath U.,and Weigel D.,2008,Control of jasmonate biosynthesis and senescence by mi R319 targets,PLo S Biol.,6(9):e230

Takeda T.,Amano K.,Ohto M.A.,Nakamura K.,Sato S.,Kato T.,Tabata S.,and Ueguchi C.,2006,RNA interference of the Arabidopsis putative transcription factor TCP16 gene results in abortion of early pollen development,Plant Mol.Biol.,61(1-2):165-177

Wang Y.H.,Xu L.H.,and Li J.,2014,Bioinformatics identification and analysis of TCP gene family in maize,Shandong Nongye Kexue(Shandong Agrucultural Sciences),46(4):1-6(王玉红,徐立华,李军,2014,玉米TCP家族基因生物信息学鉴定与分析,山东农业科学,46(4):1-6)

Xu W.L.,Pei X.L.,Jing Z.G.,and Xiong Z.L.,2015,Genome-wide identification and expression analysis of chalcone synthase gene in pepper,Jiyinzuxue Yu Yingyong Shengwuxue(Ge nomics and Applied Biology),34(8):1747-1752(徐婉莉,裴徐梨,荆赞革,熊自立,2015,辣椒查尔酮合成酶基因家族全基因组鉴定及表达特征分析,基因组学与应用生物学,34(8):1747-1752)

Xu Y.R.,Li Y.Y.,Pang H.B.,Zhang Y.X.,and Liu Y.L.,2015,Progress on study of CYC-like genes during the floral development of angiosperm,Shengwu Jishu Tongbao(Biotechnology Bulietin),31(3):10-16(徐蕴如,李玥莹,逄洪波,张雨欣,刘羽莲,2015,CYC类基因在被子植物花发育中的研究进展,生物技术通报,31(3):10-16)

Yuan W.,Gu Z.G.,Chu W.X.,Ye L.H.,and Yang G.Z.,2014,I-dentification and structure analysis of TCP transcription factors in cucumber,Fe nzi Zhiwu Yuzhong(Molecular Plant Breeding),12(2):287-295(袁伟,顾掌根,褚伟雄,叶立华,杨国志,2014,黄瓜转录因子TCP基因家族的鉴定及结构分析,分子植物育种,12(2):287-295)

Zhang C.L.,2012,Functional analyses of two transcription factors,TCP15 and TCP22,from Arabidopsis thaliana,Thesis for M.S.,Lanzhou University,Supervisor:Li J.,pp.47-49(张春雷,2012,拟南芥TCP15、TCP22基因功能的研究,硕士学位论文,兰州大学,导师:黎家,pp.47-49)

Zhang S.G.,201 4,Bioinformatics analysis of TCP transcription factor family in apple,Shandong Nongye Kexue(Shandong Agrucultural Sciences),46(5):12-17(张士刚,2014,苹果TCP转录因子家族生物信息学分析,山东农业科学,46(5):12-17)

Zhou M.,and Luo H.,2014,Role of micro RNA319 in creeping bentgrass salinity and drought stress response,Plant Signal.Behav.,9(4):e28700

Zhou Y.,2013,Arabidopsis transcription factor TCP17 regulates light signaling transduction and auxin biosynthesis,Thesis for M.S.,Lanzhou University,Supervisor:Li J.,pp.44-45(周瑜,2013,拟南芥转录因子TCP17参与光信号转导和生长素合成,硕士学位论文,兰州大学,导师:黎家,pp.44-45)

Zhou Y.P.,Zhang Y.J.,and Yi H.L.,2016,Bioinformatics identification and expression analysis of the Citrus TCP gene family,Guoshu Xuebao(Journal of Fruit Science),33(5):513-522(周延培,张雅剑,伊华林,2016,柑橘TCP家族生物信息学及表达谱分析,果树学报,33(5):513-522)

Zhu S.S.,2015,Functional analysis of a transcription factor PCF7in rice(Oryza sativa L.),Thesis for M.S.,Chongqing University,Supervisor:Hu T.Z.,pp.34-35(朱珊珊,2015,水稻转录因子PCF7的功能研究,硕士学位论文,重庆大学,导师:胡廷章,pp.34-35)

Zhu Y.,2012,Cloning expression and functional analysis of Le TCP4 gene in Lithospermum erythrorhizon,Thesis for M.S.,Nanjing University,Supervisor:Yang Y.H.,pp.1-2(朱煜,2012,紫草Le TCP4基因的克隆及功能分析,硕士学位论文,南京大学,导师:杨永华,pp.1-2)

基本信息:

DOI:10.13417/j.gab.036.002539

中图分类号:Q943.2;S641.2

引用信息:

[1]阮先乐,张福丽,王俊生.番茄TCP基因家族全基因组鉴定和分析[J].基因组学与应用生物学,2017,36(06):2539-2547.DOI:10.13417/j.gab.036.002539.

基金信息:

河南省基础与前沿技术研究计划项目(132300410032)资助

发布时间:

2017-06-25

出版时间:

2017-06-25

检 索 高级检索